Obsidian is an excellent personal knowledge tool. VaultBase starts where Obsidian stops — team RBAC, permission-scoped AI, decision traces, and a self-hostable server — all using the same plain markdown vault format you already know.
| VaultBase | Obsidian | |
|---|---|---|
| Plain markdown files | Yes | Yes |
| Wikilinks & backlinks | Yes | Yes |
| Team RBAC (roles, groups, folders) | Yes | — |
| MCP AI agent access | Yes | — |
| Permission-scoped AI | Yes | — |
| Decision traces | Yes | — |
| Context graph | Yes | — |
| Audit logs | Yes | — |
| Self-hostable server | Yes | — |
| Plugin ecosystem | Growing | 1,700+ |
| Offline editing | Yes | Yes |
| Cloud sync (1 user) | $4/mo | $4/mo |
Obsidian vaults are single-user by design. Sharing means copying folders or using third-party Git workflows with no permission model. VaultBase adds real RBAC — roles, groups, folder-level and file-level permissions, deny-wins logic — on top of the same plain markdown files. Your team gets scoped access without leaving the vault format.
Permissions use a {user} expansion
pattern, so personal folders, shared project spaces, and sensitive policy docs
coexist in one vault with clear boundaries.
Obsidian has community AI plugins, but none expose your vault to external agents through a standardized protocol. VaultBase ships an MCP server with 25 tools — search, read, write-back, trace queries, intelligence briefings — all respecting RBAC. An AI agent can only see what the calling user is allowed to see.
This matters for teams using Claude Code, Cursor, or custom agents. Your knowledge base becomes a living context source without exposing confidential docs to the wrong model or user.
Obsidian has no built-in concept of a "decision." VaultBase decision traces are markdown files with structured frontmatter linking inputs (docs read), policies (rules applied), and reasoning. The context graph tracks these relationships, flags stale references when source docs change, and detects contradictions between decisions.
When an agent asks "has this been decided before?", VaultBase returns precedent decisions with full provenance — not just keyword matches.
Obsidian Sync is a proprietary service — you cannot run your own sync server. VaultBase is a single Go binary (AGPL-3.0) you can run anywhere: a VPS, your company's infrastructure, or behind a corporate firewall. The cloud option starts at $4/mo if you prefer managed hosting, but you always have the choice to self-host with zero licensing cost.
Credit where it's due — Obsidian is a remarkable tool, and we're fans of the vault-format approach it popularized.
If you're a solo user happy with Obsidian's plugin ecosystem and don't need team features or AI agent access, Obsidian is a great choice. VaultBase is built for the use cases Obsidian wasn't designed to solve.
VaultBase uses the same vault format as Obsidian — plain markdown with wikilinks and YAML frontmatter. Migration is straightforward:
No export step, no format conversion, no data loss. You can even keep using Obsidian as an editor alongside VaultBase's server and sync.
Download VaultBase free. Your markdown, your rules.
Open source. AGPL-3.0. Plain markdown files. Export anytime.